NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10021787

Scaffold Ga0210403_10021787


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10021787 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5115
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_1002178710F084509GAGGMPSYGNVLPPVSVGFGDSAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRVAVEIVWNAAPGAINVQLQTADTDIDAAYIQEGAAITNVNAANVTRAEFPDVVAKFARILIATLPNNVTATAKIGS
Ga0210403_100217872F009917AGGAMGTSGWTYVVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRALALRHLPNIYRALNVIAERQGIKLEEMPSVNYVDLRNGERHR
Ga0210403_100217873F002853GGAGGMGRGAQGQTQSLTDNQLGQTNALNQQVLGQQQSVGNLVVPQFQSILNNPGFSAADKVAITGQSQGALASAFDSLQQSAANRAARTGNSAGFSELTDQLARQKGIAEGNLAQQNQLNFSNTAFQRQMAALQGLSGLFGVDSNLLGRTLGIPAELLNVRANASRNNGGFFSSLGSSLGGALGGVPGLFL
Ga0210403_100217877F007488N/AMKIRVYEESDLDELRAIHARQGFGYAFPDLKNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLNPEAGSPREKWQWLLGLHEATRRDALARGLEDVHAWLPPEIAQKFGKRLTRLGWVRDDKWTPYCKRLEPTFAVVNGKKT
Ga0210403_100217879F000781N/AMLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPATPSPAPPSIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTLAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYVGSLASAPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGSLRGGNGFGVVPGARVVKQVVL
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