NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210403_10039105

Scaffold Ga0210403_10039105


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10039105 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3792
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F002853Metagenome / Metatranscriptome526Y
F007128Metagenome / Metatranscriptome357Y
F009917Metagenome311Y
F084509Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_100391051F007128N/ASDDGAAISSYYTTHFFPERAVESSLGLGAHRKLFSYLTMYVEGAGNLALTSFVDSESAATAQQPLGMSSPGLKDLELPINVLGERVAFQVGTNQAGAWFKVQRFAPSVRVDPWAPVRGMN
Ga0210403_100391052F084509GAGGMPSYANVLPPVSVGFGDSAAVIASTDVIFPAPFKSAQVALAPAFSSGKVRAAVEIVWSAAPGTISLQFQTADTDIDAAYSQEGALISNVNTGNVTRAEFPDVVAKFARILIATLTNNVTATAKISS
Ga0210403_100391053F000781GGAMLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPATPSPAPPEIAALKVQAANGWFDLAIMDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQFVGSLASAPVTFGSPATAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGARVVKQTVL
Ga0210403_100391056F002853GAGLNLYTGGIMGRGAQGQTQSLTDNQLNQTNALNQQLLGQQQSVGNLVVPQFQSILNNPGFSVADKAAITGQSQGALASAFDSLQQSATNRAARTGNSAGFSDLTDQLARQKGIAEGNLAQQNQLNFSNTAFQRQMAGLQGLSGLFGVDSNLLWRTLGIPAELLNVRANASRNNGGFFSTLGSSLGGTLGGVPGLFL
Ga0210403_100391057F009917AGGAMGTSGWTYLVVVFSVGAQLVVFLRWMHRRMRDDEIQRVFVRALAVRHLPNIYRALNIIAERQGIKLEEMPSVNYVDLRNGERHHR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.