NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10045563

Scaffold Ga0210403_10045563


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10045563 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3505
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004610Metagenome / Metatranscriptome431Y
F006325Metagenome / Metatranscriptome376Y
F023929Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_100455632F006325N/AMIKWEFVRRLGGEKMTNPITNLDTCTDEELEQALARLLAHAPGEVLNDAEVEKFWLIHKEIQPRAIVG
Ga0210403_100455633F023929GGAGMQPHRVKLGVRPCLLLECKFWLEDDGWNATIESLGLTVHAPSFEAAKNDIELALGKHVELLLGEHVAGNRGLAA
Ga0210403_100455634F004610GGAGMKFTGLGTDRLRLKLRIMSDDDLWWLFLNHREGCLQDFWGEVETRKTAGMLSKSSPFWAMGDPVRYRQPRGSGGNSNLIELTREEWETRRRRKMFRVISA
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