NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10148597

Scaffold Ga0210403_10148597


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10148597 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1916
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F015246Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_101485973F000092GAGVKQHLGRQSGVQNVEVSLLDGKVDVTPKEDGQIDPVQLLKATYDSGVTAAEMDITARGRIVKDASGDLALQVEPNRSFAFAPNELSKGLESLAGTQTMVTIRGQFYKKPAGKKKADLSAPLKLVILEVQKKE
Ga0210403_101485974F004291AGGAGGMNMKRVALLVLLGSVVVVPVAQAQVKHIEMRVEGMT
Ga0210403_101485975F015246N/ALHSQDDRIAGVTQNGSGGDVLLAGITSYAGVRPGMHVWFGMDWDAVHSTGASFMPLRRHISFGITQQFRLHL
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