NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10000838

Scaffold Ga0210399_10000838


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10000838 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24074
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000132Metagenome / Metatranscriptome1972Y
F008565Metagenome / Metatranscriptome331Y
F040257Metagenome / Metatranscriptome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_100008381F008565AGGAGMKRLTTAALLLLCISFPLPSLAARHKVPRFLSKESTVDMSKMNRIFVGWVDLGADDWALWGYQSKTEWTDIIGSLNSSFSRNLVSGRTITSAKDKGDENAAGNDLYIKFSDVRVDYNNYHLILSIHFIDPTTNAEIATIPVRPYYGNDWGFKNYLKAALDEVGTKVQVEVTGETP
Ga0210399_1000083811F000132AGGTGGMLIEKLAAGVVQVQTPIGPRYVMPSFLQRIYLLWMFRNFPILPHAVLNGRQQRMIDQMCGEQRFASMAYADGMDEAPVIGTVEHRPPIAADQLPPRRPVASEAPGLAAEARQRS
Ga0210399_100008382F040257AGAAGGMKRTIVIAVWLLIVALPVLLIAKKKLAPVDMKGMNKVFLGWVNISPDDYHHQGYATREEYQAVINHANAAFQEGSQAKAFSGRTMTAAKNQGDENTAGNDVYVKFSDVTYDHKYRLHLSVHFIDLKSNAEIGSIPLQTYSAHMCGLEGCLIKELDQVNGELQKEFAGGK
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