NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10000929

Scaffold Ga0210399_10000929


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10000929 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22983
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F036885Metagenome169Y
F097840Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_1000092921F097840N/AMPLQFSDFPRCAFGELSAMTRLAVRTVTQAAAVLKHKSDEGVEMYSTTSLNGVPTIQRGGRNILGVLDQNWEFANEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRKVQHA
Ga0210399_1000092924F001596AGGAGMSWFHSSTAPVDARNRASSAEVIACFRDQRNILGKIAFLITGDRTMADHAVVQACEITLQGNSPFRDWLLEWAKIATIANAISHATEAIRICETTYKDRRCSHVEHLSQGNDAERSASLDLLLGADSQTLLAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGASCYAMTWLHDLKPA
Ga0210399_1000092925F036885GGGGGMTEKKNRERVIAEITLSHLIRLGNEQGCPVSRQQALAFLNQDGRAFEMWKYMMQAAEDFIADRLFQHSFSAGQHNGFASRPRSA
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Institute for Fundamental Biomedical Research
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