NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10003279

Scaffold Ga0210399_10003279


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10003279 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12609
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001177Metagenome / Metatranscriptome756Y
F035852Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_1000327912F001177GAGGMAIKRPTKSRGTPSHKPAATAPLRHIDVRAPQQMVPGEFYVGWACKNRSCGLVIAVAATAPGGKAVTEFSDQLTAIKCPHCGDEDLYRWSARSEQKYTPKSVST
Ga0210399_100032794F035852AGGMETSILYTFSTIAQALGGAFALLSAFVLFRFQSLDASMLNASIGLRSIWKTPADLESYDTLRGLSVWPSLNKAIDAQIDRMTAANEKPSFEVMATKTRLRAGQSLHRFLTWTFWLAVSLTFLVMTGSVAVIPYAHEIAQSYSLQYIHALNLAGVVAFALCMVSYVFVIYAALVSRYGKNIIQPRIDALIEGP
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