NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210399_10197206

Scaffold Ga0210399_10197206


Overview

Basic Information
Taxon OID3300020581 Open in IMG/M
Scaffold IDGa0210399_10197206 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1673
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020753Metagenome / Metatranscriptome222Y
F089215Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0210399_101972061F020753N/AYDHFATTLAELVHSGSFTKRMVNPDRGDYTAGFKGTKDSYVLTMTPKNLDAQHRSFYAEDDGKIHADETKAADENSPLLK
Ga0210399_101972062F089215AGGAGGVRSHRKMLLTVSFLLVPFGMSAQETDHHDSALMARLSYERSGVVQADGVRHVCVAVTRDGEYRIARSTPLGLTDRLHGKMPKEQLQQLTKLLTSPEFRAVSGDHSGLIRQDAESFSAEIPSPVRDHADGARQWIERDAWRLQWLNADGESPFPVSVAKVVDWLQQFQPKDGKSFLYAEFPDVCPSSGLRLLQPTVAGNQGP
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