NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000004

Scaffold Ga0210395_10000004


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000004 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)396819
Total Scaffold Genes309 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)255 (82.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019522Metagenome / Metatranscriptome229Y
F040215Metagenome / Metatranscriptome162Y
F074603Metagenome119N
F104806Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210395_10000004108F104806GGAGMPKISPKERKKLDRFHELHKAKLRRKYPEIHGKKLDYITQRFEDNDGGGWLYINLYFTDGTNFSMVFSMNNPAIVPRCIEYGDMSTGDYENIRTYYYREEKR
Ga0210395_10000004109F074603GAGGMPQFPAPLPPGEIPPLTCFQQFILCVALVTISTALLSFLLPRPLFCKLFKIAFPFMPEGIGDDDAKD
Ga0210395_10000004226F019522AGGCGGMTLSYEPAKQKPPEPGQNRARSFGTITIPGTPVGAIVSAGLVVICWFALPLSHLFILGTGGLGLIVGLLLYWKHRNPRE
Ga0210395_1000000457F040215GAGMNRGFFIILVPAFLVAIGYIVVFRYIGISPAYWRLILPVVLFAGAMWWFGRRGRKEVTK
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