NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000013

Scaffold Ga0210395_10000013


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000013 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)276299
Total Scaffold Genes239 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)156 (65.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000132Metagenome / Metatranscriptome1972Y
F029680Metagenome / Metatranscriptome187Y
F030181Metagenome / Metatranscriptome186Y
F089215Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_10000013185F029680GAGMFKISIVDTRTQRKLVVEGKLSEPWVAELSTTWRNASRNLDGRKVVIDLSSLTVISREGEDAIFDLMKQGAKFSCAGILTRHVLKGLARRCRCTPSQVLEKK
Ga0210395_10000013210F000132AGGTGGMMIEKLAAGVVQVQTPIGPRYVMPSFFQRVYLLWMFRNFPILPHAVLNGRQQRLIDRMCGEQRFASMAYANGMDEAPVIGIVEHRPPIGADQLPPRRPIASGSPGLAAEVRQRS
Ga0210395_1000001345F089215N/AMAQYFSSTSTVLQRRSAVHFLAKTLLVVSILLLSLGVWAQEGNRQNDSDLLARLSFERSRMVEDGGPRDVCLAVTRDGDYRIVRTDYLGLTQRLHGKMPKEQFQQLTKLLEAAEFRALSGDHVGLILQDAESFGAEIPELRPHAPALGPSWPERDVWRLQWLNADGENPFPGSVAKVVEWLRDFQPKGGKAFEYAEFPDVCPSRGLRLLQPTVAENEHP
Ga0210395_1000001388F030181GGAGGMIRGRSLFTAAGSLALAVGIGLQLWMSGSFAHFAGGFLLGVSIALLILGLAQPSRRVSR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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