NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000039

Scaffold Ga0210395_10000039


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000039 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)142443
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)98 (78.40%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000169Metagenome / Metatranscriptome1788Y
F000678Metagenome / Metatranscriptome940Y
F016891Metagenome / Metatranscriptome244Y
F018213Metagenome / Metatranscriptome236Y
F026069Metagenome / Metatranscriptome199Y
F032360Metagenome / Metatranscriptome180Y
F038866Metagenome / Metatranscriptome165Y
F085956Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_10000039117F026069AGGMWIFLLGPFLALFPRRWRKALPFYDAVHWRSAAILSGLAESALAIAGLMYWYSYSMTAWVSHALDDVLNKSSATGITDHEIGFAALVVWVTHPLTWGIAYFCIEGAWRLCASFTDTVLGVFPLYLLEKIYSKIFRRGAPEPPGAVKFSQGHVSSYVGTVTEKVLTARLSQVPDELSVSKNSSEEFLEIRASRAKPDWTPPRVVRYEDRYYRLEECSRGSGARPFVYKLRRLAAGVPGRSVLTYSPDEAPILASR
Ga0210395_1000003915F016891N/AMPNLYFCQPHAKNQGMLRAVLSVNECERVVSKHPVTFFGESFPSLAEGPAGESDFAVLRFAAEETVGNWRPGFYRLDSNLVELNDALRDLQR
Ga0210395_1000003939F032360AGGAGGMAETRRRFLVTLAAAASCSVAADGSVLAQVRKNNPFPTPPESAETQNPAEVAAAKSDPQSAKRVALQQNEKEFRVDVDRLCQLATELKQEVDRTVTTEVFSMQMYKRTQEIEKVAKMLKSKAKG
Ga0210395_1000003954F000169AGGAGGMAKKSRLNQVAASIGGALGKADRKAHQVVKAGTLAKKELHDISIQVDALKRQLAKTTKRLKNALS
Ga0210395_1000003956F018213GGAGGMIATLHFATLVFTTLFAAAAAVAFNWMLLRAMFFLMRPATATRLNSPTHLVRGTTQLTRAYASQR
Ga0210395_1000003967F038866GGGGGMTWKDELLMLWIFCSVVIALAVRHFLGGAVYLVKQMAVFSLAYLPGLLHLLAGHLH
Ga0210395_1000003969F085956GAGGLRCKVCGIDYGVSHECSGLSPFMTLEEAAPPPSEFAPFYYLRMAFNIVRWDDMAIRRASRDPNALVYGAALSAVSASIVFLVTALPGMLAHEGRTPGTIFWGLLLGLVFFWTYMGIIAAIQIGLCHAIAKIFLGATGTLAGVMRPLFLGWFVNVLILIPVVGVYAVGIAWTAVLMLVFEEIDGIRRMQAFLISAGINAVFVAIEILIPH
Ga0210395_1000003999F000678GGAGMDKFEEFGRRIDEEVSRLKKINNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKLSEAAGWIESRNSARTEKDSQKPPSQS
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