NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000379

Scaffold Ga0210395_10000379


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000379 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35068
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (81.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013473Metagenome271Y
F029259Metagenome189Y
F071543Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1000037914F071543AGGAGMTKTAALEIVWRNSKPPERRRRWEQIKQDSGVTRYLVQEFVSNSVGSFWMTTSSFEFVLGGRVA
Ga0210395_1000037915F013473GGAGMMTLSNKRQAAPLVAHPYRFATLYQAVILRAVQDLAQNEHQDEAREWLLSPDSDHAFATAGISPNSIRQQMI
Ga0210395_1000037919F029259AGGAMTPQFIQPANDSIGAELDQLTYSAYLLTLDPDLAVSVVMATIDASMEDPSPRGDLLQRTIEISLSQLRLDASAASDRESFPFEASLYGDSSFATSKRALSLKELTNGNPIMVLDSSARIAFVLTHVLGYSINGAAAMAQTSEKEYLTQLRKAYLQLASLQLGAYAIAGNMLGQIGLA
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