NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10079784

Scaffold Ga0210395_10079784


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10079784 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2410
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F004677Metagenome / Metatranscriptome428Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_100797843F000188GGAGGMGVKPELAFDVCWEVYRGAREVLETKRGISALNLKDTGKFLWRPDIRARLNEWVADFALAGKSALDGPDWASRMVLFRVYYLGLAPYDNVRHFLGLSERSWMNWSEEIRRRCGKELLSRGMFPPRRYFTNG
Ga0210395_100797846F004677AGGAGGVTRYHTQPPWEFLLSASRNSLQSYELTRLSHAANLRKEISALLDQWLEENASAMLARWLMEQRERPPQVPDAISGTESRLNGTHAVSDNFFAEQAAPPPATRGPA
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