NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10000305

Scaffold Ga0210401_10000305


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10000305 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60786
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (88.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004190Metagenome / Metatranscriptome449Y
F005312Metagenome / Metatranscriptome405Y
F007939Metagenome / Metatranscriptome342Y
F009363Metagenome / Metatranscriptome319Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000030513F009363GGAGGLAVRICPHCKAEISAPEAAARSNDMECPKCGTRLEVAPGGRTISTLCGLAAGAIAWRLSSGSTSDLGAVLPTLYAFLAFGIVSPLVLMFTANLRNAPAVPVPEPAHAPASAGHGAGGHDSGHH
Ga0210401_1000030514F005312N/AMLIPLSYYCLHGTVTAILPSMARYSAILGRRIVVTYRAGEIALPATGELAADSGKSIFLEESYRQQGKIKTFRWEIPYPSIVELRECPEIPRPSASVNEPREASAEPARQPNALELKNRP
Ga0210401_1000030523F007939N/ALLTLLVLLVFATGVVSDWNHQGVNDDARCPYCHLGHQTPAQLVVAPSVSLLKPVASLPLPQDAVLATGPVFSQTSPRAPPSA
Ga0210401_1000030527F007939GAGGVAWLRFTGMNAQKTIRLLAVSLTLLVLLVFATGVVSDWNHHSASDDAHCPYCHLGHQTPAQLVAAPSVILLKPVASLPLPQDAAPATEHVFSQTAPRAPPAA
Ga0210401_1000030540F004190N/AMFYQLSWTTLPGLRGLSCTEFRATPTPAPDAVRGVAVECASESERDALLAELDAYFGAKRFLNTAAAFDAVKDFAISRTARKSS
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