NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10002442

Scaffold Ga0210401_10002442


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10002442 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20607
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (94.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F000801Metagenome / Metatranscriptome886Y
F034304Metagenome / Metatranscriptome175Y
F069419Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000244216F034304AGGAGMSGINGDKSRFHRERKQKIAKRNRNRELMTRFTEGKLATPASESKPKTASA
Ga0210401_1000244218F069419N/AVTSWGLWGKKKTKKQSAKAILAEVIKEMAKPRVARSAKE
Ga0210401_100024423F000801GGAGGMANKEWTVKELTDALKQFPLDAKVYYEMGPNGPATIGKAQYLKALGTDDEMGVLLDR
Ga0210401_1000244236F000065AGAAGGVTHNTKKPVPKLRKAPQPPLSHAGAIPDIDRAKRPPLSGPSATGEELTPGDRVEGLGDFGKPTGEFGTVERANEEDAVVKWDDDGRERLHQPSLKKVLAA
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