NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10029526

Scaffold Ga0210401_10029526


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10029526 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5226
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001851Metagenome / Metatranscriptome626Y
F005764Metagenome / Metatranscriptome391Y
F008095Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1002952613F008095GGAGMEKSRDQDQAKGAVEQDQNNQGGNTSMNGQLGHRDE
Ga0210401_100295264F001851AGGAGMSATSIFIGLVVALFTILLLGRARKLKPRITGYGTQRMCPSCGLITSRLKACCSECGKSLTPVVYSTVEK
Ga0210401_100295265F005764N/AVILGLSLSAFAQIVAEPATSVFPSSYRLPDFPLTAFPPALSPRPVFEFRGIRIGDEMKEAERKFLSLKVPSLSSKPGLCGSDGIKRIETCTDVLDTGEYVNLTMWDRRVARIYVSMDRRTTGNTYNSYVLALTTMYGSPDERETKYYHNGIETGSSGERLRWSNGDQYMDGSATERAITIGSRALDTTIDEQERVYERN
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