NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10278740

Scaffold Ga0210401_10278740


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10278740 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1532
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_102787401F036810AGGAGMSLQLQQGTGVSVRISWLAFAASKCKAIQLSIERRTFERKLETIVRAADAHHSCGRSPGTIHFKLLRTCADELCADFAQRWNIPPEMLEAQIPAITKLKSLADPPAKPNPAPLVGLGIVAAAATFLLLGVLGGLASVGYHLVGGR
Ga0210401_102787403F045709GGAGGVNLTPSQKGSFLAGIGLWVLIWASVWKADDIAQAMCIQRWFNSTRFLRWIGQHKSTSLLGTEVINYGTHGLDPLGVSFSLGGTLVNVLFIYLLLPCLEELFRQKSTFTATLQ
Ga0210401_102787404F014894AGGAMRMSIGIPGFSVYFEHHQVKPFIKDHSRKAKELFDERVVPAVLQGACKALEVVANNTADAHDYLISKVKPKQSARIP
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