NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10296987

Scaffold Ga0210401_10296987


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10296987 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F017385Metagenome241Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_102969871F017385N/AADDGTILGAVLLRLTAEAYLLLDPRAGTPRQRWQWLLELHSAAERDAWQRGLEDVHAWLPPPIAKKFGKRLARLGWIRDDTWTPYCKKLAAHT
Ga0210401_102969872F099605GGAGGMPNTTQSASWDFNPSDPVRLTATFSFDTEDTQDAAPVAAALAAIQARLASATLTATQPDGATISINITI
Ga0210401_102969874F000624AGGAMPHGLTWFTALVPVLVQFVVFLRWLHRRMRNDEITRTFVRDIATNHLPHIYNALQKIAAQQGIELDETPLVQFVDLNSRR
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