Scaffold Ga0163149_10017119

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163149_10017119

Scaffold Ga0163149_10017119

Overview

Basic Information
Taxon OID	3300020596 Open in IMG/M
Scaffold ID	Ga0163149_10017119 Open in IMG/M
Source Dataset Name	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.G1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6439
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (46.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Lake Vanda, McMurdo Dry Valleys
Coordinates	Lat. (^o)	-77.5281	Long. (^o)	161.59	Alt. (m)		Depth (m)	19
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075726	Metagenome	118	Y
F092846	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0163149_1001711910	F075726	N/A	MEEVLLHGAKNRVCGWKAMNETHRNRPKTCEFTKEVKVEALRKADWCCEECGIKKKDTVDGYLEIHHRVGIAVALHNHPELSHAMIASIANAVVLCIPCHDLMDREDPKHHKEYAVELRSMFVRQLQLEFATLG
Ga0163149_100171199	F092846	N/A	MNIEQHLDIFEAGRPSMRENNADLLLLGVLAEGEFNEFIDAWLDLIANPTQETAQEVGQEAGDVSLYLSQCMRSIGSTLEGEMLDKIAYNTSRFLSVDFQEKPYAQGYAESKQWVKDVGWKKSYYMEPRIEYAVGKP

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