NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194126_10286090

Scaffold Ga0194126_10286090


Overview

Basic Information
Taxon OID3300020603 Open in IMG/M
Scaffold IDGa0194126_10286090 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1110
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073288Metagenome / Metatranscriptome120Y
F095175Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0194126_102860901F095175GAGVTTIIGIQETDGCVIAADSRTTTEKGRPYAHPITTKITKRGKFLIAGAGTTQPCDIVQHIWKPPTIPTNIKDIYHFIITTVIPSMRECLRDSGFVHDEKAEDHEFLFLMALNGTIYEVDDTYSVFLRDDGIYGLGSGSSYAIGAVAAGANWK
Ga0194126_102860903F073288N/AAQAISPLLTIEKQLSIITDKKDRVELAISQFTDSKREVQCALQIAYKESRYNIDSINKSSGATGVWQLLWAKPEWSLLKQTEEAHKYVLNRYETWCEAYRFHQERNWY
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