Basic Information | |
---|---|
Taxon OID | 3300020603 Open in IMG/M |
Scaffold ID | Ga0194126_10286090 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1110 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Tanzania: Lake Tanganyika | |||||||
Coordinates | Lat. (o) | -4.9054 | Long. (o) | 29.4853 | Alt. (m) | Depth (m) | 150 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F073288 | Metagenome / Metatranscriptome | 120 | Y |
F095175 | Metagenome / Metatranscriptome | 105 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0194126_102860901 | F095175 | GAG | VTTIIGIQETDGCVIAADSRTTTEKGRPYAHPITTKITKRGKFLIAGAGTTQPCDIVQHIWKPPTIPTNIKDIYHFIITTVIPSMRECLRDSGFVHDEKAEDHEFLFLMALNGTIYEVDDTYSVFLRDDGIYGLGSGSSYAIGAVAAGANWK |
Ga0194126_102860903 | F073288 | N/A | AQAISPLLTIEKQLSIITDKKDRVELAISQFTDSKREVQCALQIAYKESRYNIDSINKSSGATGVWQLLWAKPEWSLLKQTEEAHKYVLNRYETWCEAYRFHQERNWY |
⦗Top⦘ |