NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194126_10435866

Scaffold Ga0194126_10435866


Overview

Basic Information
Taxon OID3300020603 Open in IMG/M
Scaffold IDGa0194126_10435866 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)825
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066602Metagenome126Y
F102844Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0194126_104358661F102844AGGAMPVYKVPGYAVVSEALPGTTEWAKQAALTSGGALWNNGTYAMRNMRGTGSDTTRGIISNHARGVAMDLSWRRIEPRKLGVNDGRVKAVKWLQTVLDNWELLGVQCVLDYFPNDYGRGWRVDRVEALPQKPHAHQAWVKYNRPTIHGAPGGDWFHIEITLGMANNADRVKQAFDTVFRQSTTPQQPLATVAATTKKGP
Ga0194126_104358662F066602N/ANSSNKTMDKNAQLQTADQTLKGGVIALVSYVAMRRGWEPELIALAIPVVSGVLAAITTLFNNRSTACMFVAKEDKNK
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