Basic Information | |
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Taxon OID | 3300020610 Open in IMG/M |
Scaffold ID | Ga0154015_1559046 Open in IMG/M |
Source Dataset Name | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 690 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F074492 | Metagenome / Metatranscriptome | 119 | Y |
F096762 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0154015_15590461 | F096762 | N/A | NLESTIEHIDKILLDMAAEEATTAAEEAATAASEKGKEIADEASENEISMFRNLIGEQLSKAEIKELKEYAKSCGYKPGALLFGGVDDEKLGCIRDQTGAKIISTLSKNIGFPKLETDISRYRRQHVVGSLFYSNFKVNCFFPLTFIVSKNENMSDEGCFRAEYASEQSLADATRF |
Ga0154015_15590462 | F074492 | AGG | VQSMLLSKALQMQQDFEDKKHEVIIENLESKIKEQSDAFEKKNFELQATEGLLAEAEAKITELNTKLLR |
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