NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_100904

Scaffold Ga0214169_100904


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_100904 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010669Metagenome / Metatranscriptome300Y
F012769Metagenome / Metatranscriptome277N
F065718Metagenome / Metatranscriptome127N
F075671Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1009041F075671N/AMKEICELLNELDAGREKFFIDRRTKVNGVITLHTPQEEIEKLFVKQLVTLTKLDCKCQFVEQILAAVIRLKENSSFPIQREAVNLARVLLTGD
Ga0214169_1009042F010669N/AMELELTRMEQSEDNLTDPSDSEDFNMGISETHWPSDPSKIKCRIHAYIAHEQEILAELLSELESEVQTNSENIIIERIKRCFRCIEDIIEYATQFLKQARLTEMRDFTGFYYVIENEAKQTIRQALTIVSTLRRGNLFHLAPSVKGLVIELDYIRILVSRKTLEQVEETLEEYGVRRTHTLREIEKLFS
Ga0214169_1009043F012769AGAAGMKFQDPKFKVRELVKDKFDPILKEEYQEEIARKLFNASIEVIRQSVNRITEQHYLPYSLEEKDDAVKEARVQVSEWKNRILIRRQEAKITRIDRALSKKILDMLAEYLRALEETDIAKRQSKLYHVDAVAAITELQINRKFASPERKPVKRKIH
Ga0214169_1009044F065718N/AYKPLERIWNSKKVIRKIDPGWVLADKVTLLEHQMLNQIDTIDISVPWDDVENKSRYLDLYKTIIRLKAIHPDWEMYLEDSKNHHFCKCLPCSEVKRRYQEMLDATSSEESSSEEENKT
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