NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_101780

Scaffold Ga0214169_101780


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_101780 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1392
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F073465Metagenome / Metatranscriptome120N
F089846Metagenome / Metatranscriptome108N
F100356Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1017801F100356AGTAGMEYRTLKNEIELLESVQRLMNEVNTELDFNDNYMTMLELFSTMKRLKIIQPKWIFKVARTPPLEENIFFRGKKKN
Ga0214169_1017802F011134N/AMSTFAKSEENYDSKETLVDTIKTDLISQFKVCVDEINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
Ga0214169_1017803F089846N/AMDSNQNIFRNINKAIRAITPGVYNDAQVENLMKIYDVIVAEKEVNPSWQLPSPETRKRKKPRLK
Ga0214169_1017804F073465N/AMSNWRYRWRRPRPRYRPAPPAPRIEAVPIRNIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFSELENDSETEPL
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