NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214194_103737

Scaffold Ga0214194_103737


Overview

Basic Information
Taxon OID3300020686 Open in IMG/M
Scaffold IDGa0214194_103737 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1495
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017597Metagenome / Metatranscriptome239N
F019778Metagenome / Metatranscriptome227N
F024477Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214194_1037371F019778N/AMSSDVASQTELIFLYIGESRLIKRISNDILLVLHEDAKSINTIKLKELLQFKIRGRLSYFNHLAMSTVKEEAKYASALYTQLDSLLVILSSDDKVTAIKLITKICSAYRANKETVQSTAQTSNNIEKMEIG
Ga0214194_1037372F017597AGGAMKKIFKSEKLLSKLAIKRKELIKITKSSKSTLIKTEMITRILITALKAKQVIAIRFQVNRTNNLQIWGQSPNILSA
Ga0214194_1037373F024477N/AMSYDIIKNSSKASSFELLIKNITLIEKVEDFYKELDQITNYRFECHGKPDPDIYYMKDIIKIRLIELERLQTQRIKELNYLNEKDL
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