NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214239_102113

Scaffold Ga0214239_102113


Overview

Basic Information
Taxon OID3300020688 Open in IMG/M
Scaffold IDGa0214239_102113 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2424
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021463Metagenome218Y
F075594Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0214239_1021132F075594GGAGMSSVFSVTRDQIITLALRKLGVLELGSVPDSETVANASLALNLYIKQMETEGLKLWTVNELVLPLVNNQTVYPIGPVSQVPDTALNTPKPLKIIQGWLRQITVQPPIDTPMQLLSQQEYNTLGSKFSTGVANSLYYEIRQNSGNLHVYLTPNYNAAYQYELHLTAQQPIEDINTGSSIPNFPAEWMNTLVWNLADQLAIEYSVPANHRQEIAMRAKAYREQLTDWDVESVSTFFQADLRMANVQFGQPN
Ga0214239_1021133F021463N/AMPDQLETRVVRLEVYSKNHAEDIKELRETTIDLKGTMHSIEKNLSQIKYIAIGALVVIVAQTIGLDKALRVLFGA
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