NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214210_1000939

Scaffold Ga0214210_1000939


Overview

Basic Information
Taxon OID3300020689 Open in IMG/M
Scaffold IDGa0214210_1000939 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4858
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026810Metagenome / Metatranscriptome196N
F031767Metagenome / Metatranscriptome181N
F033695Metagenome / Metatranscriptome176N
F033705Metagenome / Metatranscriptome176N

Sequences

Protein IDFamilyRBSSequence
Ga0214210_100093910F026810N/AMAASINRRILTMTKEEHVDLFKGGLKMLLNFITTAIDILNDNMKGTIGLYYGLEPWGRFLQYYLAMFEKTLVLHKKQVNDQGYLIAERLSLPLMKDIGILIDMCKEGRTPDTLHKLKAYQHHVQHLLSKPNPEWTEELMKIHIFSINSTEFEKIKEKVNDPVLVNKLGVVTNQALVPNPSQTEQNQNSALDLSLPRQ
Ga0214210_10009396F033705N/AMEDPVVAIHPLDYLFQGLEAAEVLKLHIVSLIKEEANRLKNLKLKLNSVRKLVEVNQTNSRKLVQIFQEDLNIMPLVAKFITILTELDEISACNTISEMIGVLNKISECMLQIQIHLN
Ga0214210_10009398F031767GGAMNNNPINQKKIIVKRLERKPRQNYVKTLASLKGIVEETDKLYNQFDSQEQALRKRVSGCQEWTRYWTRGGNLSKKEKSLMYYLEDISNRLIRISDMKNLEEKERLLYYLKVEISLETLHNEKYRKRDVSTNKNS
Ga0214210_10009399F033695N/AMEGFNQEFKLAMEEVQELTRRSAMYSSRGNNGPTKVDIKAVQYYRIEVDKRIDYIQEMMEIFPFKTDIFYLWKIHQNILKLLSMILSNEDQKDRCQKLDSYVKVLEKFKNETDYSYWKDYISIHENKILEGS
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