NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214210_1003007

Scaffold Ga0214210_1003007


Overview

Basic Information
Taxon OID3300020689 Open in IMG/M
Scaffold IDGa0214210_1003007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2104
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F016116Metagenome / Metatranscriptome249N
F021930Metagenome / Metatranscriptome216N
F022867Metagenome / Metatranscriptome212N

Sequences

Protein IDFamilyRBSSequence
Ga0214210_10030072F021930N/AMSDQDLRRVTDLLKEVELEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVTKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRLTK
Ga0214210_10030074F022867N/AMELDLQIREQLTSLASNYYNRFWMKSYILSCMVMENAAQNIQLGIIGGKGVTTILEYNIEISRQIDNLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHRVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWKNELNLLH
Ga0214210_10030075F016116N/AMVEKLAKHERLALYNLTEREIDQLEEELAKQFPKEQFAETYIEMWQIYRDTKAIQIYNLIEAKYPGSHNDEKRAGIWFEIATLFPHRLHELVKP
Ga0214210_10030076F013499N/AKETHIRILLSMSEGMKDIGITISGIKGLIMLLQAHQRELVSKGEPDPSEGSLGAARLAIDQLKEKIETIVGPEESTGAEGFEVEIHESEDQSQTE

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