NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214190_1004063

Scaffold Ga0214190_1004063


Overview

Basic Information
Taxon OID3300020695 Open in IMG/M
Scaffold IDGa0214190_1004063 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2044
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F017436Metagenome / Metatranscriptome240N
F017786Metagenome / Metatranscriptome238Y
F057096Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0214190_10040632F017786N/AMDKGVKFVMNREEMKSLSAKQILMAREKLGLGEHVLLVNEIFISPISFQNAMEIVRNIKEKVKLRELELQALQT
Ga0214190_10040634F017436N/AMDGQYRKMFRETVITVQRLSISAAVFTVTERRNNIVPQKTTTRCRTVVKMMINEIKDDIATLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKELKDMYYFMDRLKATTFDEWKNFLITGSTEFFDNRF
Ga0214190_10040635F008991N/AMHLTVKITEQVEKKLEVVLKGKYDNKTIWMYYKVSLQLLRDIIENLIACHHTTYPLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDKLVSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIQFCEENGWAV
Ga0214190_10040636F057096N/AKAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAVKIALSNRNEEARNRILRELLEKTITKIEALSVRASPSP
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