NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214177_1000649

Scaffold Ga0214177_1000649


Overview

Basic Information
Taxon OID3300020705 Open in IMG/M
Scaffold IDGa0214177_1000649 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)8486
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029343Metagenome188Y
F066397Metagenome126Y
F091426Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0214177_100064917F066397N/AMSKSTSIDVNYLSYACDLQGNCAWSLKAGSPDIKQVPAPADNSTAFLPDNPTQYASILKLADRANITLDNLVVDQGSECTVDVNNNVTATVTGTFGNSTPNIGNQIFSVKGNCNVTINGTLKGAGNRMNADILVDNWSDQDYSGSTVDLTNAKHETGRKLNVVYRIGSSKIKGDCNKLLLPSIGLTAYYYLKLLVRKVMGIKQGQKGPSFL
Ga0214177_10006496F091426GGAGLKTVKQRKTNNLLSEAEYYTGVGGQPKTPETMKPYETSDNVPTLEKIADLKNNGAGGVNPEALPYPLQDSVLQLANLYLLTLDLKNKAATAATMPLFKGKDKELKKFRAKLAGIMAAYKELAGELNKFTLAPK
Ga0214177_10006498F029343N/AMENEASEPIYSNRSISTYEFARWAALLEAVDLIAEKCNDKGIDFNSNEGMKYIKPLDIQDYVDNRTDTLLMKIQTARGIEKSLNNIKCLQIEKQLRKLDIQN
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