NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214177_1004104

Scaffold Ga0214177_1004104


Overview

Basic Information
Taxon OID3300020705 Open in IMG/M
Scaffold IDGa0214177_1004104 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2138
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001991Metagenome / Metatranscriptome607Y
F007405Metagenome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0214177_10041042F007405GGAMVVTISPTHQFTYDGAQLNIYHANKGEGLPQHDHTYAHATMCNSGSCLVSLEGRSYTIDKNSQPLNLPAGEWHEIEALEDNTVFVNVFAEGKY
Ga0214177_10041043F001991GGAMAIFNKNTLTQVSGFDNPIIAGELVWDQATYWNLVITGSDNVTPVDLTGATINAQIIRREVSNIQDTRYGLSFDIADYSPTPTPVSLTVSNRVDTAGTFTLTIDSSAWGLMSSDPELEINATNCVGYSGRIKISFPASGSTPANDYIIFLLFLVRSDGIIVE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.