Scaffold Ga0214198

Basic Information
Taxon OID	3300020710 Open in IMG/M
Scaffold ID	Ga0214198_1000036 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300020710 Open in IMG/M

Scaffold ID

Ga0214198_1000036 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	42432
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (81.54%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

42432

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (81.54%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Trout Bog, Vilas County, Wisconsin, USA

Coordinates

Lat. (^o)

46.041

Long. (^o)

-89.686

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009720	Metagenome / Metatranscriptome	314	Y
F014940	Metagenome / Metatranscriptome	258	Y
F022104	Metagenome	216	N
F031398	Metagenome / Metatranscriptome	182	Y
F034036	Metagenome	175	N
F076853	Metagenome / Metatranscriptome	117	Y
F083897	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214198_100003610	F014940	GAGG	MATSLSTVYHMNRLAGTIVNGVPQYDFDGACTKWGTVVLGAHNATRGIDVLNQIYAYRNGGKNYYEDTPGILNLLAGTFGLGEAEAASRITS
Ga0214198_100003618	F022104	AGG	MTSTDLTTIAYNAVFTIGATGTGIWYIFKHGVQNVLKSEMNDIKTIKNEVTPNSGGSLNDAIRKQVIPMIETLVEKQQNIAVDLGTLNGKFEQHIREHND
Ga0214198_100003619	F009720	GGA	MINLFKKKYIHEATGDVLTFSEQISWKIQGIIRNWFFVILWTGVTFVWWAQPTWFTDTHAYIKWMNLASWLAVTVELIIGIAMIGQTKRDAMIIRHILKLEKQEIDHLQDIMEQQLHD
Ga0214198_100003624	F083897	GGAG	MDDIANIKPTTGAEADYRNLGPIRVCPCGSDLWSVKCKFDDDGEIGIYFLDINCALCGSLAIAVTPPLGESHG
Ga0214198_100003632	F034036	N/A	LVHREDSGLTTIAAIQGPDWVVVGADSQSSDTDGFAINIPGGKVFKNSNIVFAGAGAVRGINLLQHDFAPPVVNTKDIDKYVTRQLIPAMRRTFSEAGYEINKGDAAVENDNIWIVVIKGEVYRIDEDYSWERTNNNLYVAGSGEQFALGAMDALTNGVMVDDLAKAKKIVTKAIQTASKYDTATGGKITITVVQENK
Ga0214198_100003652	F031398	AGGAG	MATMKSSLTTKVPSPKNQGGHGSSDATTQKTAIQKKSGPAGTGKSSLTLTKQPSGTRGTGTTAGKPMK
Ga0214198_10000369	F076853	AGAAGG	MCVECGCNKNAVGGANDKLTGKPTKDKFGSYEGVGGTKNK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214198_1000036

Overview

Ecosystem & Geography

Associated Families

Sequences