NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214198_1001414

Scaffold Ga0214198_1001414


Overview

Basic Information
Taxon OID3300020710 Open in IMG/M
Scaffold IDGa0214198_1001414 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4082
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057846Metagenome135N
F088130Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0214198_100141411F088130N/AMADLFTVARVQDGIAKSLRRIDELVDQIAEAGDLAAETEVAYKTEFAKARLTYRALHDKATVGAVEDYATDTCADLLLAYKIADNRLTTSRESLRAAQSRLDGLRSLLSSIKAAT
Ga0214198_10014144F057846AGGAGGVKNSDRMIRDRKIIEATISRLTDGVMLDLCRRAGTRAIADSAERGPRGKGTHSDPTAAAVIRKESARLADPVFDSVRDISRLLDEMARCSQKLQDLVRFVQTGKEQAKAQTTANCKQCDRLVYCTPADRLRSGLCQACYQAQRRAKAQ
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