Scaffold Ga0214178_1000021

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0214178_1000021

Scaffold Ga0214178_1000021

Overview

Basic Information
Taxon OID	3300020718 Open in IMG/M
Scaffold ID	Ga0214178_1000021 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Scaffold Components
Scaffold Length (bps)	52787
Total Scaffold Genes	110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	68 (61.82%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048761	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214178_100002114	F048761	AGGA	MDNINILANRAIERAKNLQEFLVFRDMDELVFDGNPMPYSINHVMGGPVEIMVPAISQEEAEQRVNNWLKGQRA

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