NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214246_1000157

Scaffold Ga0214246_1000157


Overview

Basic Information
Taxon OID3300020727 Open in IMG/M
Scaffold IDGa0214246_1000157 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)19422
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (89.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020485Metagenome223Y
F035995Metagenome171Y
F044873Metagenome153Y
F091214Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214246_100015714F020485GGAMRIICTTKQHWEIKDGKLILGAKNDEFLAEQLTKMTVRIEAEIRLDIYEKICAIDFVNDRKTIVKSGIENVALQVQDICARIALGELK
Ga0214246_100015718F035995GGAGGMSVVTPEQVERRLKELSKLIDEAHDQLVDSEANYHRNKAEYELAMAKSRIGLASKSSPTGKNYTVGEREDMALIENNDLHKQIATDEAIVKANRANVARLRVQVDIARSIGTSVRTGMDV
Ga0214246_100015738F044873AGCAGMNPMIIERDVITIADIDEAIAHLAVMLKDRYGNRLTHQRKAFLMSEMDNLLDARLEALNEPNNNPE
Ga0214246_10001577F091214AGGMRKPWVKSKEITLEDLAWLMFEKTTFLEAQEFAYDLGYEIVIKWRD
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