NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214246_1018217

Scaffold Ga0214246_1018217


Overview

Basic Information
Taxon OID3300020727 Open in IMG/M
Scaffold IDGa0214246_1018217 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1204
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071947Metagenome121N
F100346Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214246_10182171F100346N/AVLCQVEFLNAAIDRAPRGSRLHGLHRVSDPSDQIVEVLIKCMEWNIMTRSRSIPESELPEVHLAAVDLLELLKRNLPDKCGEESGWNFEKAHSILHKVREIVMWGNSDNTSCQGAEHAHIELIKSVAHLTNNKDVFLCILRFHTRVGFLRHYERLLAELEGLPDAPGDKYTADSQVLCDRNFNVACETGIRYPTLSAMLNRDAMLIRISVRFIPCYPRLYHVILGYPILQMGYPD
Ga0214246_10182172F071947GAGVKLDLDLLKPWRVSASAAAPNDDASPPVRHMSQQQPSQVWLEYAYRKHHPALQWLPTKLAEWIANNLQDELGFPDKADPRRGWTPAELNSILQNHVVRNRDGCALTTFGCVEWESELYRGVMRARCYPWNMPKHRFHKMNPQ
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