NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1000380

Scaffold Ga0214170_1000380


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1000380 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)16614
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066711Metagenome / Metatranscriptome126Y
F082065Metagenome / Metatranscriptome113Y
F098538Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0214170_100038020F066711GGAGMAKVNRSKWYKFVGDVYEHYEQDRSSKERTHTDNGWRLRSRKYGGTATFAKLPLTESLEQRPCPITEGKPGIYILRDSIFPQGFYIGKGKDITDRIWKHGVKLDGTDKWNAGVGTTENFAKYRELRLEKGLTTFDDVEIAFWITDKFDELEDQLMGAYEAKYGMIPFCNSTEESLFQVWD
Ga0214170_10003805F098538GGAGMSDQLIAVANSGDQWAAERAQYALQVHDAVVNGQMSKEEASEVLQDMINTQQLQEQANADQVKAALFFGITQLISMYA
Ga0214170_10003806F082065GGAMKKLLLILAVLSLSACSTLESLKEQIPSRWDANQSLIVTDMQQMTRHIDCTADLKSQLHSLFMKVEWYDIYASTKGTYDMAKLDQVMLTTIKEFQERTDKGPVSPMYCDMKKKVLVQQADIIAKTVQGRF
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