NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214170_1000409

Scaffold Ga0214170_1000409


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1000409 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)15778
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (82.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F028070Metagenome / Metatranscriptome192Y
F041564Metagenome / Metatranscriptome159Y
F064358Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0214170_100040925F064358AGGAMLCYSCSKQKDELHPCQSAILNGVNLFMCQSCIDGKYEPRWVIILAGRQNGADFVRDYIIKRRYFGRPISAEEIIA
Ga0214170_100040927F028070AGAAGMASIRYTVEMAKKIREIKVPVKGLQLDIRARPNYLALTVYEENIMEYNESKRMQIMEYLLLVRKLIMAYGTPCEIEGIKWVSDKQKQP
Ga0214170_100040931F019426AGGAGGMRVLVFGSKDWTDYNDLIRQVTLLIEDNKHFYPDDKEYVFVHKGMPGAENMITEYIGKTEKFLRQKGYKIKEELVRDKSSFSDVTMIESDASIGLVFGESPRNRQCIKVMEAMGVPYRFFPK
Ga0214170_100040934F041564GAGVKPLEYNPSDEEHQEIMEYLISEGAAILEGIDEDGEAIYRFDMDILEEVMPELHAVMQEDMDQVLVDLFQKGLIEVSYDEELNAIMSISEQGKVALAEAGFDLNEDEDTY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.