NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1001300

Scaffold Ga0214170_1001300


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1001300 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)7117
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003080Metagenome / Metatranscriptome508Y
F009462Metagenome / Metatranscriptome317Y
F024559Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0214170_100130013F003080AGGAGMTTAKDLTDQLINRAMNLKEFVVEREFNDIPMHGIIKFNVQHTQGKPARIFVHALTQQEAEEMVNEWFEEAND
Ga0214170_10013005F009462AGGAGMKLHESVRDTFKTMVIKENDGFRLTLNKHEVLSPKGLFSIDMVQDSLKDGEIVSSQTYNFFMTKEECQALAYGLTA
Ga0214170_10013008F024559GGAGGMTSAVIKLIFGITLIVVAVIGGPIAGIWSLNTLFPVLTIPYTWETWLAFLLLFGSATGLKFGRDK
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