 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020732 Open in IMG/M |
| Scaffold ID | Ga0214201_1001977 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5908 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F045530 | Metagenome / Metatranscriptome | 152 | Y |
| F076862 | Metagenome / Metatranscriptome | 117 | N |
| F086589 | Metagenome / Metatranscriptome | 110 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214201_100197711 | F045530 | GAG | MIKSITEKLEFLNSMEELYIKVQEMLHYLGIKSPSKPDFNYYSELIKQRKQDLAFARWTIQRQYRKWFMVHMSKTGLIKIYKSKEQIKKVYNTAITEEGTRRHVDEEGSPRKISSGIYTRQKIQLN |
| Ga0214201_100197712 | F086589 | N/A | MEATLITLDTLLSNMEAELRTDMNINIPLNQEFEPSQQGDGDEIFLSANTDIRHSLNEISQNSQQGDGDEIFLSANTDIRHSLNEIGQNSQQGDGDEIFLSANTDI |
| Ga0214201_10019776 | F076862 | N/A | MSDPSRNSTVEEITKGIRTLDIENQEVENLKEVILQGVKSIGTVTELISQLVYEEDKRRSQFKDILKMVKNLLESNSHKTHTIARQYGRKHPPLTGPLARMLMDLADLEDLVSCKEIEEMKEVIEDLDNW |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |