NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214172_1000131

Scaffold Ga0214172_1000131


Overview

Basic Information
Taxon OID3300020733 Open in IMG/M
Scaffold IDGa0214172_1000131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)40827
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (85.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033683Metagenome176Y
F035607Metagenome / Metatranscriptome171Y
F045505Metagenome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214172_100013117F033683AGGAMSYDNFENEIKTAANDSKWFNGTSESILVRLDRLQDILDRARTAASNPNVSELDLTRYANTITALSTEKEQLEKLAAEYVDFDVQDYLDSLPGGTIAREYRISSAGTADLGEDDGSLLFKAASSVQSEFKDADWVNFVTAGAEIWVEDQNNRLLNSQLNTREAAVYYVENKTLPILDVTKRAAIIENFVDNVEICRRAKNDIGSFRGIKAAKTNKLAATFAEHAIDESFGDSFNWL
Ga0214172_100013124F045505N/AMKKIITISYDAQNSQSEELASQEITETLDGLANSLRTQVNNVQFVVKEEPKEN
Ga0214172_100013151F035607AGGAGMAKTVSKSTDISSESTAVPVVDLGGHFEDHKPDPTDIVAGRAPVAPINFTGMRDIQTSDWIENLMDSGTVFSSPKGSFKLAAKGFHGSVQPIAAEIRQDPYVLRAVQRGRISFLTEDSAMEKIAGLVDESTTSESHLDRLRDSLNAGAMDNNGMYKISLPDEAEPKAGGSQTWEQVWQQSTSTPNN
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