NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214172_1000403

Scaffold Ga0214172_1000403


Overview

Basic Information
Taxon OID3300020733 Open in IMG/M
Scaffold IDGa0214172_1000403 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)19349
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001201Metagenome / Metatranscriptome749Y
F009449Metagenome / Metatranscriptome317Y

Sequences

Protein IDFamilyRBSSequence
Ga0214172_10004031F001201N/AMYKEGRQIVADIAHEVDGVVKDVKAVQKKAKGLLGFLTSVFGKKEEEQPQVAQPVKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNSLKNYVKEQEEFALHANNDEGQEAAIKITIANLQMEKLNQELSDYMVYHVPHELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWQREQKADLIKGRMAATAITVLML
Ga0214172_100040317F009449GGAGMAKHDDIAEDKKLIKKAFKMHDKQEHPGKRTNLSKLKKGGLAGVSGESMKAVGRNMARANNQRGG
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