NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214108_10203407

Scaffold Ga0214108_10203407


Overview

Basic Information
Taxon OID3300020815 Open in IMG/M
Scaffold IDGa0214108_10203407 Open in IMG/M
Source Dataset NameFood waste microbial community from Durham, Ontario, Canada - FW2 megahit
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)623
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location
Location NameDurham, Ontario, Canada
CoordinatesLat. (o)43.6629Long. (o)-79.3957Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059631Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0214108_102034071F059631N/AECGGAMVGKMPNVIWLEGSFVETIKGWQSGWFYITEPRATNWVAAPEFRSEIPTWLTSWKEKGLSWGSSMEMDGLQKCIRNMISKKLKLVNIVQVMLFRRILPCQQRDFNLWEFDPARHQTLSELFDTMHTDVWRVLFKGAEVPPSLTEDRGLSAKRLACSVSSIRPVGHLFSLA
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