NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_10186394

Scaffold Ga0215015_10186394


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10186394 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35691
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000195Metagenome / Metatranscriptome1659Y
F001221Metagenome / Metatranscriptome743Y
F011176Metagenome / Metatranscriptome294Y
F084068Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0215015_1018639411F001221GAGMVTRSTVGALALGAVLLIALPRHGSLGADFVNTFSVAFCFTFFGSSIDALLLALPDVRIGVGRLVRIAGWFAGGLWCYVAARWLWLKFGRDLGELPGLVWGGVLLVALQPLMNRAAGRGDAAL
Ga0215015_1018639413F000195AGGMDLTVTRAQYDAVRGVRHLPDVLRRVLDRATPAGDAFVLHLTYEEATALNELCAWNVHSDAGGVVTPESRVFDQLVTAILTHPEY
Ga0215015_101863943F011176GAGVLFWLRAADTLTAADQAEAFDDLKYYTEQVAPALGASGIQLLATNADTVYVALPNKQRRSILLAGLDYPYGYLLIDPGGPERILTGVYADDELMDELRAYFDLPEDTTTTQPRITT
Ga0215015_101863945F084068N/AMVVTVYVAAPLADRMMGRLQRVAARHQWALSVRTDAAAVAEADLVIVDSGGAPIGRVRAGSPRMAQAKQMAEAALP
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