NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_10214907

Scaffold Ga0215015_10214907


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10214907 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28792
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (75.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000696Metagenome / Metatranscriptome931Y
F014050Metagenome / Metatranscriptome266Y
F047834Metagenome149Y
F072549Metagenome121Y
F094262Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0215015_1021490715F072549AGGAMTENITDWLARVRQGMRSRYVRLLEAQVARERAEIERLRAENRALLNSLLGTAGVPPIEAPPAHPAQIAPIRRRSWQQIFAAREIEAEREARAREQSAQRQPGD
Ga0215015_1021490722F094262GGAGGMPAYNNSSSPSAIWPGDFAQVWNAEQPAPGSGGASASQRVALGTKEGGPGGFSVTGFFSGAPGSFEIDVQVSDVDADAQYQTCANGNITTVDATNNTFHLDASGVLATFVRLLMRSRTNAVNVTADIRRL
Ga0215015_102149073F000696AGGAGMPTAYNTAGQVTSLVRSLLNDAAGNLFTDTVLIPYANSAYRKVQRALANIRSGSFLSDDVLLVVPAVAGADPSVQVSVTDATAPPNQLPVDLLVPLKLWERRNGSSDDFVEMTDLSDHGGLPSQPQGLNLQYWEWRTDGLYFLGATQDTQIRLRYEKAYPAFVDGTSSVLIRDAIESIAYFTAAMAAAARGAPQAARWDDAGSDALEDLLVRATHREQHSGHRRRPYSWRQGYGPIV
Ga0215015_102149074F014050N/AVRILRTVVTHSLELWAKGLLAAAIAGAANGVITGFAAVGIDPAHFNLQAGLKSTLAIAGVSALMSGMIGVAAYLKQSPLPANNQRE
Ga0215015_102149076F047834GGAVPSILNRETSFREGTPFSGSTISPRAQIKVIREQHAAPESVIRRLEIAGGRNRFGEANYRAVWGWSRLAWVGGKWEDRNAAGELVRECVELRRVPKYAPHNRWHIERWLPPEAYGSPRAWYAQTIEREDGVSVPALGPYPERGEYEHCFTLEGPRGEFVQLTPAVAEYIACAIEAGRHTSAAERRKAIEQRERRSERDYDRWAWDVLDSGCPAFHGVPFVNVL

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