Basic Information | |
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Taxon OID | 3300021046 Open in IMG/M |
Scaffold ID | Ga0215015_10214907 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Colorado |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 28792 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (75.76%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us |
Source Dataset Sampling Location | ||||||||
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Location Name | Huntingdon County, Pennsylvania, United States | |||||||
Coordinates | Lat. (o) | 40.6949 | Long. (o) | -77.9199 | Alt. (m) | Depth (m) | .9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000696 | Metagenome / Metatranscriptome | 931 | Y |
F014050 | Metagenome / Metatranscriptome | 266 | Y |
F047834 | Metagenome | 149 | Y |
F072549 | Metagenome | 121 | Y |
F094262 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0215015_1021490715 | F072549 | AGGA | MTENITDWLARVRQGMRSRYVRLLEAQVARERAEIERLRAENRALLNSLLGTAGVPPIEAPPAHPAQIAPIRRRSWQQIFAAREIEAEREARAREQSAQRQPGD |
Ga0215015_1021490722 | F094262 | GGAGG | MPAYNNSSSPSAIWPGDFAQVWNAEQPAPGSGGASASQRVALGTKEGGPGGFSVTGFFSGAPGSFEIDVQVSDVDADAQYQTCANGNITTVDATNNTFHLDASGVLATFVRLLMRSRTNAVNVTADIRRL |
Ga0215015_102149073 | F000696 | AGGAG | MPTAYNTAGQVTSLVRSLLNDAAGNLFTDTVLIPYANSAYRKVQRALANIRSGSFLSDDVLLVVPAVAGADPSVQVSVTDATAPPNQLPVDLLVPLKLWERRNGSSDDFVEMTDLSDHGGLPSQPQGLNLQYWEWRTDGLYFLGATQDTQIRLRYEKAYPAFVDGTSSVLIRDAIESIAYFTAAMAAAARGAPQAARWDDAGSDALEDLLVRATHREQHSGHRRRPYSWRQGYGPIV |
Ga0215015_102149074 | F014050 | N/A | VRILRTVVTHSLELWAKGLLAAAIAGAANGVITGFAAVGIDPAHFNLQAGLKSTLAIAGVSALMSGMIGVAAYLKQSPLPANNQRE |
Ga0215015_102149076 | F047834 | GGA | VPSILNRETSFREGTPFSGSTISPRAQIKVIREQHAAPESVIRRLEIAGGRNRFGEANYRAVWGWSRLAWVGGKWEDRNAAGELVRECVELRRVPKYAPHNRWHIERWLPPEAYGSPRAWYAQTIEREDGVSVPALGPYPERGEYEHCFTLEGPRGEFVQLTPAVAEYIACAIEAGRHTSAAERRKAIEQRERRSERDYDRWAWDVLDSGCPAFHGVPFVNVL |
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