NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_10571980

Scaffold Ga0215015_10571980


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10571980 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5084
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012334Metagenome281Y
F017278Metagenome241N
F097102Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0215015_105719803F097102GGAMSEKDRFENLVSILEIEVYNCGCKVRIYEVEFGESKNDLTERPSLISDYSPCSKHRNARRIPPQEARLLKVRGEHEAFLNE
Ga0215015_105719804F012334N/AMSLKRPVELGKDARLFLLFLSEINLVMGALFFVYPSLVIDLWPWTVKALAVRFIGAIFLAIAFGCWSALRAKIWQRAKILILVGGTFFGITSIVAIVLAVSQGGGGIITAWIAYFLVASIGNFYLLNRYGWPRKPQDRLGTGQPWRTARWFFRIQTVVVGVFGIMMLLLPDVAQHQFWPWLVATPTLQMFAGLFLATCLATGWASLQSDIGRIKVLLPLDVIFPSLALLAVGIHWDVISSQSPSTPVTGVWVFIYAFVAVGSAYLYFYSRKLATT
Ga0215015_105719806F017278GGAGMSEKKNMRDEVRREAKEALEAMRKDLQQLSKDLIVASKTLKTSTEKFVQDTGPKVSAGLEETVETFRRTMTTIDKQTKPQQAKLLRTYKKFLTKQVDFIEKRLKQTE
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Biomedical Sciences Research Center "Alexander Fleming"
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