NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_10817396

Scaffold Ga0215015_10817396


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_10817396 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6947
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014894Metagenome / Metatranscriptome259Y
F032938Metagenome / Metatranscriptome178Y
F094349Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0215015_108173961F094349AGGAGMLLTPTMIGALLAGICLWSLFWAALHKIEEIPYVRGTLSTNQCLDWIEQRPGLTLLLTEITNYLVHGISSPVGVAFAMGGTIVNMLFVYGYIPSRNVLSVLSARLRKCS
Ga0215015_108173962F014894AGGAMRMSIGLPGISVYFDHRQVKPFIKDRSKKAKGLFHERVIPAVLRGTCKVLEVVANNTADAHDYLIGKLKTKQSA
Ga0215015_108173963F032938AGGAGMKKYLVVSYDDDQQQWFWDYVAAKTSADAVAHVCERRPYVIAADAASLFQVLSIANDLKSRPIARIIHQFDYDTATSEKEKGGKER
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