NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0215015_11110351

Scaffold Ga0215015_11110351


Overview

Basic Information
Taxon OID3300021046 Open in IMG/M
Scaffold IDGa0215015_11110351 Open in IMG/M
Source Dataset NameSoil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Colorado
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2948
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Czos Across The Us

Source Dataset Sampling Location
Location NameHuntingdon County, Pennsylvania, United States
CoordinatesLat. (o)40.6949Long. (o)-77.9199Alt. (m)Depth (m).9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003842Metagenome / Metatranscriptome466Y
F103374Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0215015_111103512F103374N/AMLGDCLITLRYSFADVEISLGRDFPGRNQFIDDLANFRVSLVRDSRHVKIRVVTEQSSEKSEVY
Ga0215015_111103514F003842GGAMVIAKETRQTVAESAKWSFSADGKPLSIDDFLETYRKQGVFYEGKEQWLKGVTKVTWENFFLVCTEELDDISQRAAKMLIFYCLEIVEDVASRLRGSVSPGKIADAMKREFDEQYDNRVYQFQWAVRHEAVRDAVTNAVMNRWGK
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