Scaffold Ga0206227_1085829

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206227_1085829

Scaffold Ga0206227_1085829

Overview

Basic Information
Taxon OID	3300021063 Open in IMG/M
Scaffold ID	Ga0206227_1085829 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos D4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	609
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.96	Long. (^o)	-106.99	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056735	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206227_10858292	F056735	N/A	YAVENVSGWNDPKKDAILDELNEIITPERSEKLQLDFVKMFSDALPVHPLYYGPEVLVAKKGLTGITPRQETGGQNSSTWNMHKWDKV

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