NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196978_1000002

Scaffold Ga0196978_1000002


Overview

Basic Information
Taxon OID3300021067 Open in IMG/M
Scaffold IDGa0196978_1000002 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20-13C
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710113
Total Scaffold Genes636 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)446 (70.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002570Metagenome / Metatranscriptome547Y
F033742Metagenome176Y
F047898Metagenome149Y
F048131Metagenome / Metatranscriptome148Y
F060315Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0196978_1000002222F033742AGGGGGMFIYTIHPMPGQKAKFEGDTSIKYRVKRVDDSIAVSKKGRSEIIRDNLEYEEALKLIEGFNNMEGKSQGMREEAARQKYEL
Ga0196978_1000002315F048131AGGAGMMRRRNLAGLIAVMLTLGTFAPALAAPSGAEDTDVRKVDAKVVEVNNRHISIVARTGVEHVIATDAADTHVTLRGKRIDLKKLRVGDVVTVHLDPSSEMKFARRIIIGEQSGDTVASTRD
Ga0196978_1000002410F002570AGGAGGMKSRLTVTLLTLAGLIILAGQLRGGSSAAAVDNHVNPHYKGGSSFNLAGAGPNVARCGAFPENVELSFTGSGIDTEGGYNTAVFSACTNTTTNLVFDLKATDTYVQTGDQVNIEGDPFVLVPNPAICAASNAHGVPFRVAGGTGKYAGATGQGRFHITSNLTPCNGLTPPAQVWFEGVIKTK
Ga0196978_1000002510F060315AGGAGGMSENLGLGTMTGEHTKPEVESPNTKIHGEVPEGSPMPGAEREEPTEVKGEVKPNTE
Ga0196978_100000277F047898AGGGGGMNLVGTWNLEVATPFGKHPATLVFQGTGGALSAHISSRLGDAPLESLTVTHDGFDARVTMEFQGKPYNASIKGQVESHNAINGTIKVSLPIAPPIRYTGTRAG
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Institute for Fundamental Biomedical Research
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